The BioPhysConnectoR package is an add-on package to the statistical software R version 2.8+ []. BioPhysConnectoR includes source code from the bio3d [] package and uses functions from the matrixcalc [] and the snow [] package.To address runtime features we integrated native C/C++-routines for more complex computational tasks that are callable from within the R environment. WebFor a set of sequences given in an alignment and a corresponding PDB file the covariance matrix for each sequence is computed based on the given molecular structure. The latter can be directed into a file. The Frobenius norms are computed upon request.
GitHub - cran/BioPhysConnectoR: This is a read-only …
WebSep 5, 2015 · actually both of used commands worked but the issue was that the first there was no gene id in first column in which i expect to be extracted then normally the produced txt file seemed empty!!! i donno why when i used bed produced from converting the tophat2 bam the txt file was empty while when used the bed from bowtie2, the txt file was not … WebMar 22, 2024 · BioPhysConnectoR-package BioPhysConnectoR Description Functions to investigate the relation between biomolecular structures, their interactions, and the evolutionary information contained within sequence alignments of such molecules. Details Package: BioPhysConnectoR Version: 1.6-7 Date: 2011-11-03 Depends: R (>= 2.11.0), … dangers of bath salts drug
BioPhysConnectoR: BioPhysConnectoR version 1.6-10 from CRAN
WebMay 30, 2024 · In BioPhysConnectoR: BioPhysConnectoR. Description Details Author(s) References. Description. Functions to investigate the relation between biomolecular … WebConclusions: BioPhysConnectoR is implemented as an R package and distributed under GPL 2 license. It allows for efficient and perfectly parallelized functional annotation of … WebSorts a matrix in respect to one or more specified columns by preserving its row context. If more than one columns is given the function uses the columns in the specified order for sorting. birmingham street art