High-quality genomes
WebApr 1, 2016 · High-quality sequence and assembly of genomes is a lynchpin to our understanding of the genetic diversity and evolution of species. The development of massively parallel sequencing technologies has drastically reduced the cost and increased the throughput of genome sequencing ( 1, 2 ). WebThe innovative Proximo algorithm uses the Hi-C data and scaffolding optimization to orient and sort WGS reads, producing very long contigs and high-quality, chromosome-scale scaffolds. Hi-C data and Proximo may also be integrated with other computational approaches (e.g. FALCON-Phase ), to enable 1 the production of “gold” and “platinum ...
High-quality genomes
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WebHuman Pangenome Reference Consortium. Erich D. Jarvis. , Giulio Formenti. , Arang Rhie. , Andrea Guarracino. , Chentao Yang. , Jonathan Wood. , Alan Tracey. , Francoise Thibaud-Nissen. , Mitchell R. Vollger. , David Porubsky. WebJan 17, 2024 · Abstract. Outbred laboratory mice (Mus musculus) are readily available and have high fecundity, making them a popular choice in biomedical research, especially toxicological and pharmacological applications.Direct high throughput genome sequencing (HTS) of these widely used research animals is an important genetic quality control …
WebJan 13, 2024 · This study provides resources to support a better understanding of the genome architecture and acceleration of the genetic improvement of B. napus. The assembly of eight high-quality rapeseed... WebDec 23, 2024 · The reconstruction of genomes is a critical step in genome-resolved metagenomics as well as for multi-omic data integration from microbial communities. Here, we present binny, a binning tool that...
WebJan 5, 2024 · Comparative genomics is a science that compares genomic data either within a species or across species to answer questions in biomedicine. Laboratory experiments can then investigate the functional impact of those genomics similarities and differences. The history of comparative genomics goes back to the mid-1990s, but comparative … WebImproving genotyping for complex genomes. Accelerating crop improvement relies, in part, on a plant breeder’s ability to predict a phenotype based upon reliable genotyping data, which can be complicated by subgenomes in polyploids, making interpretation difficult. Next generation sequencing (NGS) can help researchers unravel and understand ...
WebFeb 24, 2024 · The planning group also stressed the need to develop standards to ensure high-quality genome sequences and to preserve associated information for each organism sequenced, such as where it was collected and what it looked like. Getting DNA samples from the wild may ultimately be the biggest challenge—and the biggest cost, several …
WebAug 13, 2024 · In this study, we obtained two high-quality chromosome-level genomes of F. candida, for a parthenogenetic strain (named FCDK, 219.08 Mb, 25,139 protein-coding genes) and a sexual strain (named FCSH, 153.09 Mb, 21,609 protein-coding genes), reannotated the genome of the parthenogenetic strain reported by Faddeeva-Vakhrusheva … how to seal draughty windowsWebOct 13, 2024 · The reconstruction of genomes is a critical step in genome-resolved metagenomics and for multi-omic data integration from microbial communities. Here, we present binny, a binning tool that produces high-quality metagenome-assembled genomes (MAG) from both contiguous and highly fragmented genomes. how to seal doors for winterWebThe availability of high-quality genomes is essential in the fields of veterinary medicine and nutrition to unravel the biological role of key microbial members in the canine gut environment. Our aim was to evaluate nanopore long-read metagenomics and Hi-C (high-throughput chromosome conformation capture) proximity ligation to provide high ... how to seal double wall tumblerWebNov 6, 2024 · Here, we used an iterative hybrid assembly (IHA) approach to reconstruct 49 metagenome-assembled genomes (MAGs), including 27 high-quality (HQ) and high … how to seal drivewayWebHigh-throughput technology makes sequencing to assemble new genomes accessible to everyone. Sequence polymorphisms are typically discovered by comparing resequenced … how to seal drain in sinkWebApproximately 47% (3,487/7,382) of high-quality EVE locations had TIRs , which are hallmarks of an inserted element (high quality: contig > 60 kb with MCP > 20 kb from either end, and at least three viral-like genes). These findings allowed us to conclude that the presence of a viral MCP gene is usually also indicative of the presence of a full ... how to seal dryer vent pipeWebApr 12, 2024 · High-quality chromosome-scale haplotype sequences of diploid genomes, polyploid genomes, and metagenomes provide important insights into genetic variation associated with disease and biodiversity. However, whole-genome short read sequencing does not yield haplotype information spanning whole chromosomes directly. … how to seal drafty old windows